PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf01343g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C3H
Protein Properties Length: 220aa    MW: 23362.4 Da    PI: 9.5476
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf01343g00001.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.72e-083156227
                              -S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                              k +lC+ +     Ck+Gd+C++aH++
  Peaxi162Scf01343g00001.1 31 KSKLCNKYNTAEGCKFGDKCHYAHSE 56
                              678*********************95 PP

2zf-CCCH30.65.7e-10187211126
                               --S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                               +kt+ C +f++ G C +G++C+FaHg
  Peaxi162Scf01343g00001.1 187 FKTKMCANFSK-GSCTFGEKCHFAHG 211
                               69*********.*************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.2E-72859IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-112859IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.1692957IPR000571Zinc finger, CCCH-type
SMARTSM003560.0123156IPR000571Zinc finger, CCCH-type
PfamPF006429.3E-63156IPR000571Zinc finger, CCCH-type
SuperFamilySSF547915.11E-1587165IPR004088K Homology domain, type 1
SMARTSM003221.1E-1194164IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.105.0E-1695164IPR004088K Homology domain, type 1
PROSITE profilePS5008414.04795159IPR004088K Homology domain, type 1
CDDcd001053.89E-1397159No hitNo description
PfamPF000135.2E-1198161IPR004088K Homology domain, type 1
SMARTSM003565.3E-4186212IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.986186213IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-8187216IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-6187211IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-14187218IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MNQISNMGAN PATPIGRSTG PFSDRPAPTM KSKLCNKYNT AEGCKFGDKC HYAHSEMEIG  60
KPAYDDFQAS GPPSRFSGYP RPSQPSPAAT NFGASASTSI SIDAALAGTI IGKNGVNSKQ  120
ICRLTGVKLS IKEHETDSNR RNIELQGTFD QINQASAMVR EIISNIGTPM GGPKVSAPFT  180
RGPVGPFKTK MCANFSKGSC TFGEKCHFAH GASELQRPLA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009795947.11e-140PREDICTED: zinc finger CCCH domain-containing protein 44-like
RefseqXP_016500625.11e-140PREDICTED: zinc finger CCCH domain-containing protein 44-like
SwissprotQ7F8R02e-68C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLM1A7931e-124M1A793_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000161951e-124(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8452498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.11e-45C3H family protein